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Virus Capsid

About this simulation

This model shows a virus particle built from identical protein subunits tiled over an icosahedron, which has 20 faces, 12 vertices and 30 edges. Students pick a T number of 1, 4, 9 or 16 to retile the shell and watch the capsomer and subunit counts change. Sliders set the diameter and rotation, and toggles show spike proteins or a cutaway with the RNA genome inside. It is useful for talking about symmetry, why viruses reuse one small protein, and how structure relates to a tiny genome.

What students can explore

  • Change the Capsid T number from T = 1 to T = 16 and watch Capsomers and Protein subunits grow.
  • Drag Diameter between 20 and 120 nm and compare the readout with the size of a cell.
  • Turn Spike proteins off and on to see where the spikes sit on the shell.
  • Switch on Cutaway + RNA core to find the coiled genome inside the capsid.
  • Count the 12 five-sided corners of the shell, then check them against the icosahedron facts.

Learning objectives

  1. 1Describe a virus as a protein shell enclosing a nucleic acid genome.
  2. 2State the numbers of faces, vertices and edges of an icosahedron.
  3. 3Explain how a larger T number means more protein subunits in the shell.
  4. 4Explain why building a shell from many copies of one protein suits a small genome.

Questions teachers ask

Is this virus capsid simulation free?

Yes. It is free and runs in any modern browser, including classroom whiteboards and tablets. No sign-up or installation is required.

What is a capsid?

A capsid is the protein shell that surrounds a virus's genome. Many viruses use an icosahedral shell made from 60 times T identical subunits, where T is the Caspar-Klug number.

How do I see inside the virus?

Turn on the Cutaway + RNA core toggle. Part of the shell is removed so you can see the coiled RNA genome. You can also drag to rotate the model and scroll to zoom.

Do real viruses look exactly like this?

No. The spikes here are schematic, and real spike counts and positions differ between viruses. The model also shows only T = 1, 4, 9 and 16, not twisted lattices like T = 3 or 7.

Embed this simulation

Drop it into your LMS, blog, or class site — free.

<iframe src="https://kiwibee.io/en/simulations/virus-capsid-3d-simulation/embed" title="Virus Capsid | KiwiBee" loading="lazy" allowfullscreen style="width:100%;height:min(70vh,620px);min-height:420px;border:0;border-radius:16px"></iframe>

Continue exploring

From model to evidence

Use a worksheet to capture predictions, observations, and explanations after students explore.

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