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Synapse & Neurotransmitters

About this simulation

Synapse & Neurotransmitters 3D brings chemical neurotransmission to life at the molecular scale. Students view the presynaptic axon terminal bulb with voltage-gated calcium channels, glowing neurotransmitter vesicles, and a reuptake transporter pump positioned above the synaptic cleft and postsynaptic dendrite receptors. Dragging a vesicle to the presynaptic membrane or clicking any structure triggers exocytosis, releasing neurotransmitter molecules that bind ligand-gated ion channels below. Controls for action potential rate, calcium influx, and pharmacology let students compare normal signalling with SSRI reuptake inhibition, competitive receptor blockade, and enzyme inhibition.

What students can explore

  • Drag the glowing green synaptic vesicle down to the presynaptic membrane to trigger exocytosis and flood the cleft with neurotransmitter molecules.
  • Increase Action potential rate and Calcium influx until the Postsynaptic potential readout crosses the -55 mV threshold to fire an action potential.
  • Select Reuptake Inhibitor (SSRI) in the Pharmacology menu to block the pink reuptake pump and see neurotransmitter concentration stay elevated in the cleft.
  • Select Receptor Blocker to occupy the postsynaptic ion channels and observe why high neurotransmitter levels fail to depolarise the dendrite.

Learning objectives

  1. 1Describe the sequence of events at a chemical synapse from presynaptic depolarization and Ca2+ influx to vesicle exocytosis.
  2. 2Explain how neurotransmitter binding opens ligand-gated ion channels to generate an excitatory postsynaptic potential (EPSP).
  3. 3State the role of threshold potential (-55 mV) in triggering a new postsynaptic action potential.
  4. 4Predict how reuptake inhibitors, enzyme inhibitors, and receptor antagonists alter synaptic transmission.

Questions teachers ask

Why is calcium required for neurotransmitter release?

When an action potential depolarises the axon terminal, voltage-gated Ca2+ channels open. Incoming calcium ions bind SNARE regulatory proteins, pulling synaptic vesicles into fusion with the presynaptic membrane.

How do SSRIs and reuptake inhibitors work?

Normally, transporter pumps rapidly vacuum neurotransmitters back into the presynaptic neuron to end the signal. A reuptake inhibitor blocks that pump, leaving neurotransmitters in the synaptic cleft longer to stimulate postsynaptic receptors.

What happens when a receptor blocker is present?

A competitive antagonist binds the postsynaptic receptor without opening the ion channel, preventing the natural neurotransmitter from depolarising the dendrite toward the -55 mV firing threshold.

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