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DNA Double Helix

About this simulation

This 3D model shows DNA as two antiparallel sugar-phosphate strands wound into a right-handed helix, with adenine-thymine and guanine-cytosine pairs drawn as colored rods. The Unzip fork slider opens the helix from the top, and Auto replicate adds lighter new bases to each template strand. Students can hide hydrogen bonds, change rotation speed, and jump between Whole helix, Fork and Top down views. Use it to teach base pairing rules, the major and minor grooves, and why replication copies information accurately.

What students can explore

  • Drag the Unzip fork slider from 0 to 1 and watch the Unzipped readout rise as the two strands separate.
  • Switch on Auto replicate and watch lighter new bases fill in on each old strand.
  • Toggle Hydrogen bonds off, then on, and count how many bonds join each base pair.
  • Pick the Fork view and check that every new base matches its partner: A with T, G with C.
  • Use the Top down view to see the helix from above and find the unequal major and minor grooves.

Learning objectives

  1. 1Describe the double helix as two antiparallel strands joined by base pairs.
  2. 2Apply the base pairing rules A with T and G with C to a template strand.
  3. 3Explain how each old strand acts as a template during replication.
  4. 4Identify the roles of hydrogen bonds and the sugar-phosphate backbone.

Questions teachers ask

Is the DNA double helix simulation free?

Yes. It is completely free and runs in any modern browser, including interactive whiteboards, tablets and Chromebooks. There is nothing to install and no sign-up is needed.

Which bases pair together in DNA?

Adenine pairs only with thymine, joined by 2 hydrogen bonds, and guanine pairs only with cytosine, joined by 3. Because of this, one strand always predicts the sequence of its partner.

How do I show DNA replication?

Drag the Unzip fork slider to open the helix, or turn on Auto replicate. New complementary bases appear as lighter rods on each template strand. Try the Fork camera view for a close look.

How many base pairs make one turn of the helix?

About 10 base pairs make one full turn, and each pair adds roughly 0.34 nanometers of length, so one turn is about 3.4 nm. The helix is about 2 nm wide.

Embed this simulation

Drop it into your LMS, blog, or class site — free.

<iframe src="https://kiwibee.io/en/simulations/dna-double-helix-3d-simulation/embed" title="DNA Double Helix | KiwiBee" loading="lazy" allowfullscreen style="width:100%;height:min(70vh,620px);min-height:420px;border:0;border-radius:16px"></iframe>

Continue exploring

From model to evidence

Use a worksheet to capture predictions, observations, and explanations after students explore.

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